PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G227400.1
Common NameB456_008G227400, LOC105765014
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family LSD
Protein Properties Length: 147aa    MW: 15073.5 Da    PI: 7.9166
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G227400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD142.31.3e-132953125
             zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                        C+gCr+lL YP GA+sV+Ca+C++V
  Gorai.008G227400.1 29 CSGCRNLLLYPVGATSVCCAVCNAV 53
                        ************************9 PP

2zf-LSD146.84.9e-156892125
             zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                        CggC+tlL+Y rGA+sV+C++C+tV
  Gorai.008G227400.1 68 CGGCHTLLMYIRGATSVQCSCCHTV 92
                        ************************9 PP

3zf-LSD141.81.7e-13106130125
             zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                         Cg+Cr lL+Y +GA+sV+Ca+C++V
  Gorai.008G227400.1 106 CGNCRMLLMYQYGARSVKCAVCNFV 130
                         ***********************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.90.10.104.5E-422127No hitNo description
TIGRFAMsTIGR010531.0E-122656IPR005735Zinc finger, LSD1-type
PfamPF069431.4E-102953IPR005735Zinc finger, LSD1-type
SuperFamilySSF486951.95E-529127IPR011031Multihaem cytochrome
TIGRFAMsTIGR010538.8E-156594IPR005735Zinc finger, LSD1-type
PfamPF069431.3E-126892IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010534.0E-12103133IPR005735Zinc finger, LSD1-type
PfamPF069431.0E-12106130IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009814Biological Processdefense response, incompatible interaction
GO:0034052Biological Processpositive regulation of plant-type hypersensitive response
GO:2000121Biological Processregulation of removal of superoxide radicals
Sequence ? help Back to Top
Protein Sequence    Length: 147 aa     Download sequence    Send to blast
MPVPLAPYPT PPAPYTPPAA NGAQSQLVCS GCRNLLLYPV GATSVCCAVC NAVTAVPPPG  60
TEMAQLVCGG CHTLLMYIRG ATSVQCSCCH TVNLALEANQ VAHVNCGNCR MLLMYQYGAR  120
SVKCAVCNFV TSVGGSASAA EQKFNS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gra.27510.0seedling
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012439338.11e-101PREDICTED: protein LOL1 isoform X1
RefseqXP_012439337.11e-101PREDICTED: protein LOL1 isoform X1
SwissprotQ93ZB14e-82LOL1_ARATH; Protein LOL1
TrEMBLA0A0B0PUQ31e-101A0A0B0PUQ3_G
TrEMBLA0A0D2TA041e-101A0A0D2TA04_G
STRINGVIT_02s0012g00990.t012e-90(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72932643
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.35e-68lsd one like 1
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]